PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015901953.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 216aa    MW: 23033.4 Da    PI: 4.8629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015901953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-174593355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  XP_015901953.1 45 YRGVRRRS-SGKWVSEIREPR----KpNRIWLGTFSTPEMAAVAYDVAALALKG 93
                    9****888.8*********94....478***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-3044103IPR001471AP2/ERF domain
SMARTSM003801.4E-3344107IPR001471AP2/ERF domain
PROSITE profilePS5103222.65544101IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2144103IPR016177DNA-binding domain
PfamPF008474.9E-104593IPR001471AP2/ERF domain
CDDcd000182.86E-3045103No hitNo description
PRINTSPR003674.8E-114556IPR001471AP2/ERF domain
PRINTSPR003674.8E-1183103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MHYSTPNTTS NSTGSTITTI SSSTSRNNAY PPPFSTSAGR NNRTYRGVRR RSSGKWVSEI  60
REPRKPNRIW LGTFSTPEMA AVAYDVAALA LKGKDAELNF PDSASSLPVP ASTSPRDIQA  120
AAGSAAAAIG AAAAAMGEAK KDIVGSSANW GNQAEEDTGE AVGRPDFLDE DLIFDMPNVL  180
VNMAEGMLLS PPRLDLSGDY THDYESTGDQ NLWKFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1443106468ATERF1
3gcc_A4e-1443106468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015901953.11e-158PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR05e-55ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLB9HD636e-73B9HD63_POPTR; Uncharacterized protein
STRINGPOPTR_0006s02180.12e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-39ERF family protein